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This function simulates biological effects on benchmark data by amplifying the signal between two groups based on a specified amplification factor. It modifies the input data and returns the amplified data along with group information.

Usage

biological.effects(benchmark, group, c)

Arguments

benchmark

Numeric matrix of expression values, (p by n), where p is the number of features and n is the number of samples.

group

Factor or vector of character strings defining sample groups for each sample. Must have exactly two levels.

c

Numeric amplification factor

Value

List containing modified data, group information, and amplification factor.